publications.bib
@misc{clark_connectivity_2024,
title = {Connectivity structure and dynamics of nonlinear recurrent neural networks},
author = {D. G. Clark and O. Marschall and A. van Meegen and A. Litwin-Kumar},
archiveprefix = {arXiv},
eprint = {2409.01969},
primaryclass = {q-bio.NC},
month = sep,
year = {2024}
}
@misc{beiran_prediction_2024,
author = {M. Beiran and A. Litwin-Kumar},
title = {Prediction of neural activity in connectome-constrained recurrent networks},
archiveprefix = {bioRxiv},
eprint = {2024.02.22.581667},
month = feb,
year = {2024}
}
@misc{lindsey_dynamics_2024,
author = {J. Lindsey and J. E. Markowitz and W. F. Gillis and S. R. Datta and A. Litwin-Kumar},
title = {Dynamics of striatal action selection and reinforcement learning},
archiveprefix = {bioRxiv},
eprint = {2024.02.14.580408},
month = feb,
year = {2024}
}
@article{garcia-garcia_cerebellar_2024,
title = {A cerebellar granule cell-climbing fiber computation to learn to track long time intervals},
author = {M.G. Garcia-Garcia and A. Kapoor and O. Akinwale and L. Takemaru and T. H. Kim and C. Paton and A. Litwin-Kumar and M. J. Schnitzer and L. Luo and M. J. Wagner},
journal = {Neuron},
volume = {112},
number = {16},
pages = {2749--2764},
month = aug,
year = {2024},
doi = {10.1016/j.neuron.2024.05.019}
}
@article{lindsey_selective_2024,
author = {J. Lindsey and A. Litwin-Kumar},
title = {Selective consolidation of learning and memory via recall-gated plasticity},
journal = {eLife},
volume = {12},
pages = {RP90793},
month = jul,
year = {2024},
doi = {10.7554/eLife.90793.3}
}
@article{ganguly_diversity_2024,
author = {I. Ganguly and E. L. Heckman and A. Litwin-Kumar and E. J. Clowney and R. Behnia},
title = {Diversity of visual inputs to {K}enyon cells of the \textit{Drosophila} mushroom body},
journal = {Nature Communications},
volume = {15},
pages = {5698},
month = jul,
year = {2024},
doi = {10.1038/s41467-024-49616-z}
}
@article{ellis_evolution_2024,
author = {K. E. Ellis and S. Bervoets and H. Smihula and I. Ganguly and E. Vigato and T. O. Auer and R. Benton and A. Litwin-Kumar and S. J. C. Caron},
title = {Evolution of connectivity architecture in the \textit{Drosophila} mushroom body.},
journal = {Nature Communications},
volume = {15},
pages = {4872},
month = jun,
year = {2024},
doi = {10.1038/s41467-024-48839-4}
}
@article{lakshminarasimhan_specific_2024,
author = {K. Lakshminarasimhan and M. Xie and J. D. Cohen and B. Sauerbrei and A. W. Hantman and A. Litwin-Kumar and S. Escola},
title = {Specific connectivity optimizes learning in thalamocortical loops},
journal = {Cell Reports},
volume = {43},
number = {4},
month = apr,
year = {2024},
doi = {10.1016/j.celrep.2024.114059}
}
@article{clark_dimension_2023,
author = {D. G. Clark and L. F. Abbott and A. Litwin-Kumar},
title = {Dimension of activity in random neural networks},
journal = {Physical Review Letters},
volume = {131},
number = {11},
pages = {118401},
month = sep,
year = {2023},
doi = {10.1103/PhysRevLett.131.118401}
}
@article{xie_task-dependent_2023,
author = {M. Xie and S. P. Muscinelli and K. Decker Harris and A. Litwin-Kumar},
title = {Task-dependent optimal representations for cerebellar learning},
journal = {eLife},
volume = {12},
pages = {e82914},
month = sep,
year = {2023},
doi = {10.7554/eLife.82914}
}
@article{muscinelli_optimal_2023,
author = {S. P. Muscinelli and M. J. Wagner and A. Litwin-Kumar},
title = {Optimal routing to cerebellum-like structures},
journal = {Nature Neuroscience},
volume = {26},
number = {9},
pages = {1630--1641},
month = sep,
year = {2023},
doi = {10.1038/s41593-023-01403-7}
}
@article{yamada_hierarchical_2023,
author = {D. Yamada and D. Bushey and F. Li and K. L. Hibbard and M. Sammons and J. Funke and A. Litwin-Kumar and T. Hige and Y. Aso},
title = {Hierarchical architecture of dopaminergic circuits enables second-order conditioning in \textit{Drosophila}},
journal = {eLife},
volume = {12},
pages = {e79042},
month = jan,
year = {2023},
doi = {10.7554/eLife.79042}
}
@inproceedings{lindsey_action-modulated_2022,
author = {J. Lindsey and A. Litwin-Kumar},
booktitle = {Advances in Neural Information Processing Systems},
pages = {5535--5548},
title = {Action-modulated midbrain dopamine activity arises from distributed control policies},
volume = {35},
url = {https://proceedings.neurips.cc/paper_files/paper/2022/hash/24cb8b08f3cb2f59671e33faac4790e6-Abstract-Conference.html},
month = dec,
year = {2022}
}
@article{hayashi_mushroom_2022,
author = {T. T. Hayashi and A. J. MacKenzie and I. Ganguly and K. E. Ellis and H. M. Smihula and M. S. Jacob and A. Litwin-Kumar and S. J. C. Caron},
title = {Mushroom body input connections form independently of sensory activity in \textit{Drosophila melanogaster}},
journal = {Current Biology},
volume = {32},
number = {18},
pages = {4000--4012},
month = sep,
year = {2022},
doi = {10.1016/j.cub.2022.07.055}
}
@article{ganguly_connectomics_2022,
author = {I. Ganguly and A. Litwin-Kumar},
title = {Connectomics: Relating synaptic connectivity to physiology},
journal = {Current Biology},
volume = {32},
number = {3},
pages = {R118--R120},
month = feb,
year = {2022},
doi = {10.1016/j.cub.2021.12.037}
}
@article{jiang_models_2021,
title = {Models of heterogeneous dopamine signaling in an insect learning and memory center},
author = {L. Jiang and A. Litwin-Kumar},
journal = {PLOS Computational Biology},
volume = {17},
number = {8},
pages = {e1009205},
month = aug,
year = {2021},
doi = {10.1371/journal.pcbi.1009205}
}
@article{mark_developmental_2021,
title = {A developmental framework linking neurogenesis and circuit formation in the \textit{Drosophila} {CNS}},
author = {B. Mark and S. Lai and A. A. Zarin and L. Manning and H. Q. Pollington and A. Litwin-Kumar and A> Cardona and J. W. Truman and C. Q. Doe},
journal = {eLife},
volume = {10},
pages = {e67510},
month = may,
year = {2021},
doi = {10.7554/eLife.67510}
}
@article{li_connectome_2020,
title = {The connectome of the adult \textit{Drosophila} mushroom body provides insights into function},
author = {F. Li and J. W. Lindsey and E. C. Marin and N. Otto and M. Dreher and G. Dempsey and I. Stark and A. S. Bates and M. W. Pleijzier and P. Schlegel and A. Nern and S. Takemura and N. Eckstein and T. Yang and A. Francis and A. Braun and R. Parekh and M. Costa and L. K. Scheffer and Y. Aso and G. S. X. E. Jefferis and L. F. Abbott and A. Litwin-Kumar and S. Waddell and G. M. Rubin},
journal = {eLife},
volume = {9},
pages = {e62576},
month = dec,
year = {2020},
doi = {10.7554/eLife.62576}
}
@inproceedings{lindsey_learning_2020,
author = {J. Lindsey and A. Litwin-Kumar},
booktitle = {Advances in Neural Information Processing Systems},
pages = {21213--21223},
title = {Learning to learn with feedback and local plasticity},
volume = {33},
url = {https://proceedings.neurips.cc/paper/2020/hash/f291e10ec3263bd7724556d62e70e25d-Abstract.html},
year = {2020}
}
@article{wu_context-dependent_2020,
author = {Z. Wu and A. Litwin-Kumar and P. Shamash and A. Taylor and R. Axel and M. N. Shadlen},
title = {Context-dependent decision making in a premotor circuit},
journal = {Neuron},
volume = {106},
number = {2},
pages = {316--328},
month = apr,
year = {2020},
doi = {10.1016/j.neuron.2020.01.034}
}
@article{eschbach_recurrent_2020,
author = {C. Eschbach and A. Fushiki and M. Winding and C. M. Schneider-Mizell and M. Shao and R. Arruda and K. Eichler and J. Valdes-Aleman and T. Ohyama and A. S. Thum and B. Gerber and R. D. Fetter and J. W. Truman and A. Litwin-Kumar and A. Cardona and M. Zlatic},
title = {Recurrent architecture for adaptive regulation of learning in the insect brain},
journal = {Nature Neuroscience},
volume = {23},
pages = {544--555},
month = mar,
year = {2020},
doi = {10.1038/s41593-020-0607-9}
}
@article{zarin_multilayer_2019,
author = {A. A. Zarin and B. Mark and A. Cardona and A. Litwin-Kumar and C. Q. Doe},
title = {A multilayer circuit architecture for the generation of distinct motor behaviors in \textit{Drosophila}},
journal = {eLife},
volume = {8},
pages = {e51781},
month = dec,
year = {2019},
doi = {10.7554/eLife.51781}
}
@article{aso_nitric_2019,
author = {Y. Aso and R. Ray and X. Long and D. Bushey and K. Cichewicz and T.-T. B. Ngo and B. Sharp and C. Christoforou and A. Hu and A. L. Lemire and P. Tillberg and J. Hirsh and A. Litwin-Kumar and G. M. Rubin},
title = {Nitric oxide acts as a cotransmitter in a subset of dopaminergic neurons to diversify memory dynamics},
journal = {eLife},
volume = {8},
pages = {e49257},
month = nov,
year = {2019},
doi = {10.7554/eLife.49257}
}
@article{litwin-kumar_constraining_2019,
author = {A. Litwin-Kumar and S. C. Turaga},
title = {Constraining computational models using electron microscopy wiring diagrams},
journal = {Current Opinion in Neurobiology},
volume = {58},
month = oct,
year = {2019},
pages = {94--100},
doi = {10.1016/j.conb.2019.07.007}
}
@misc{moskovitz_feedback_2019,
title = {Feedback alignment in deep convolutional networks},
author = {T. H. Moskovitz and A. Litwin-Kumar and L. F. Abbott},
archiveprefix = {arXiv},
eprint = {1812.06488},
primaryclass = {cs.NE},
month = jun,
year = {2019}
}
@article{bittner_population_2017,
title = {Population activity structure of excitatory and inhibitory neurons},
author = {S. R. Bittner and R. C. Williamson and A. C. Snyder and A. Litwin-Kumar and B. Doiron and S. M. Chase and M. A. Smith and B. M. Yu},
journal = {PLOS ONE},
volume = {12},
number = {8},
pages = {e0181773},
month = aug,
year = {2017},
doi = {10.1371/journal.pone.0181773}
}
@article{eichler_complete_2017,
title = {The complete connectome of a learning and memory centre in an insect brain},
author = {K. Eichler and F. Li and A. Litwin-Kumar and Y. Park and I. Andrade and C. M. Schneider-Mizell and T. Saumweber and A. Huser and C. Eschbach and B. Gerber and R. D. Fetter and J. W. Truman and C. E. Priebe and L. F. Abbott and A. S. Thum and M. Zlatic and A. Cardona},
journal = {Nature},
volume = {548},
number = {7666},
pages = {175--182},
month = aug,
year = {2017},
doi = {10.1038/nature23455}
}
@article{litwin-kumar_optimal_2017,
title = {Optimal degrees of synaptic connectivity},
author = {A. Litwin-Kumar and K. D. Harris and R. Axel and H. Sompolinsky and L. F. Abbott},
journal = {Neuron},
volume = {93},
number = {5},
pages = {1153--1164},
month = mar,
year = {2017},
doi = {10.1016/j.neuron.2017.01.030}
}
@article{williamson_scaling_2016,
title = {Scaling properties of dimensionality reduction for neural populations and network models},
author = {R. C. Williamson and B. R. Cowley and A. Litwin-Kumar and B. Doiron and A. Kohn and M. A. Smith and B. M. Yu},
journal = {PLOS Computational Biology},
volume = {12},
number = {12},
pages = {e1005141},
month = dec,
year = {2016},
doi = {10.1371/journal.pcbi.1005141}
}
@article{litwin-kumar_inhibitory_2016,
title = {Inhibitory stabilization and visual coding in cortical circuits with multiple interneuron subtypes},
author = {A. Litwin-Kumar and R. Rosenbaum and B. Doiron},
journal = {Journal of Neurophysiology},
volume = {115},
number = {3},
pages = {1399--1409},
month = mar,
year = {2016},
doi = {10.1152/jn.00732.2015}
}
@article{doiron_mechanics_2016,
title = {The mechanics of state dependent neural correlations},
author = {B. Doiron and A. Litwin-Kumar and R. Rosenbaum and G. Ocker and K. Josić},
journal = {Nature Neuroscience},
volume = {19},
number = {3},
pages = {383--393},
month = feb,
year = {2016},
doi = {10.1038/nn.4242}
}
@article{ocker_self-organization_2015,
title = {Self-organization of microcircuit structure in networks of spiking neurons with plastic synapses},
author = {G. Ocker and A. Litwin-Kumar and B. Doiron},
journal = {PLOS Computational Biology},
volume = {11},
number = {8},
pages = {e1004458},
month = aug,
year = {2015},
doi = {10.1371/journal.pcbi.1004458}
}
@article{litwin-kumar_formation_2014,
title = {Formation and maintenance of neuronal assemblies through synaptic plasticity},
author = {A. Litwin-Kumar and B. Doiron},
journal = {Nature Communications},
volume = {5},
number = {5319},
month = nov,
year = {2014},
doi = {10.1038/ncomms6319}
}
@article{doiron_balanced_2014,
title = {Balanced neural architecture and the idling brain},
author = {B. Doiron and A. Litwin-Kumar},
journal = {Frontiers in Computational Neuroscience},
volume = {8},
number = {56},
month = may,
year = {2014},
doi = {10.3389/fncom.2014.00056}
}
@phdthesis{litwin-kumar_relationship_2013,
title = {Relationship between neuronal architecture and variability in cortical circuits},
author = {A. Litwin-Kumar},
school = {Carnegie Mellon University},
url = {https://figshare.com/articles/Relationship_between_neuronal_architecture_and_variability_in_cortical_circuits/6721307},
month = dec,
year = {2013}
}
@article{litwin-kumar_slow_2012,
title = {Slow dynamics and high variability in balanced cortical networks with clustered connections},
author = {A. Litwin-Kumar and B. Doiron},
journal = {Nature Neuroscience},
volume = {15},
number = {11},
pages = {1498--1505},
month = nov,
year = {2012},
doi = {10.1038/nn.3220}
}
@article{litwin-kumar_spatial_2012,
title = {The spatial structure of stimuli shapes the timescale of correlations in population spiking activity},
author = {A. Litwin-Kumar and M. J. Chacron and B. Doiron},
journal = {PLOS Computational Biology},
volume = {8},
number = {9},
pages = {e1002667},
month = sep,
year = {2012},
doi = {10.1371/journal.pcbi.1002667}
}
@article{litwin-kumar_balanced_2011,
title = {Balanced synaptic input shapes the correlation between neural spike trains},
author = {A. Litwin-Kumar and A. M. Oswald and N. N. Urban and B. Doiron},
journal = {PLOS Computational Biology},
volume = {7},
number = {12},
pages = {e1002305},
month = dec,
year = {2011},
doi = {10.1371/journal.pcbi.1002305}
}
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